Curated Sequences of Coronaviridae

Family: Coronaviridae

Genera in the Family

• Alphacoronavirus curated sequences
• Bafinivirus curated sequences
• Betacoronavirus curated sequences
• Deltacoronavirus curated sequences
• Gammacoronavirus curated sequences
• Torovirus curated sequences
• Unassigned Coronaviridae curated sequences

Unassigned Viruses in the Family

Alphacoronavirus 1 (ACoV-1)

• AJ271965 Complete sequence, transmissible gastroenteritis virus strain PUR46-MAD
• DQ010921 Complete sequence, Feline coronavirus strain 79-1146

Ferret coronavirus (FerCoV)

None reported

Human coronavirus 229E (HCoV-229E)

• AF304460 Complete sequence

Human coronavirus NL63 (HCoV-NL63)

• AY567487 Complete sequence, strain Amsterdam I

Myotis bat coronavirus 3 (My-BatCoV-3)

None reported

Myotis bat coronavirus 48 (My-BatCoV-48)

None reported

Myotis bat coronavirus D2.2 (My-BatCoV-D2.2)

None reported

Myotis bat coronavirus HKU6 (My-BatCoV-HKU6)

None reported

Eptesicus bat coronavirus 65 (Ep-BatCoV-65)

None reported

Kenya bat coronavirus BtKY12 (BatCoV-BtKY12)

None reported

Kenya bat coronavirus BtKY21 (BatCoV-BtKY21)

None reported

Myotis Bat coronavirus M.mac (My-BatCoV-M.mac)

None reported

Myotis bat coronavirus D8.38 (My-BatCoV-D8.38)

None reported

Raccoon dog coronavirus GZ43 (RDCoV-GZ43)

None reported

Chaerophon bat coronavirus 22 (Ch-BatCoV-22)

None reported

Chaerophon bat coronavirus 40 (Ch-BatCoV-40)

None reported

Miniopterus bat coronavirus 1 (Mi-BatCoV-1)

• EU420138 Complete sequence, Hong Kong isolate AFCD62

Nyctalus bat coronavirus VM366 (Ny-BatCoV-VM366)

None reported

Carollia bat coronavirus 1FY2BA (Ca-BatCoV-1FY2BA)

None reported

Miniopterus bat coronavirus 088 (Mi-BatCoV-088)

None reported

Porcine epidemic diarrhea virus (PEDV)

• AF353511 Complete sequence, strain CV777

Rousettus bat coronavirus HKU10 (Ro-BatCoV-HKU10)

• JQ989270 Complete sequence, isolate 183A

Scotophilus bat coronavirus 512 (Sc-BatCoV-512)

• DQ648858 Complete sequence, isolate BtCoV/512/2005

Miniopterus bat coronavirus HKU7 (Mi-BatCoV-HKU7)

None reported

Miniopterus bat coronavirus HKU8 (Mi-BatCoV-HKU8)

• EU420139 Complete sequence, Hong Kong isolate AFCD77

Rhinolophus bat coronavirus A970 (Rh-BatCoV-A970)

None reported

Rhinolophus bat coronavirus HKU2 (RhBatCoV-HKU2)

• EF203064 Complete sequence, isolate HKU2/GD/430/2006

Glossophaga bat coronavirus 1CO7BA (Gl-BatCoV-1CO7BA)

None reported

Pipistrellus bat coronavirus D5.16 (Pi-BatCoV-D5.16)

None reported

Pipistrellus bat coronavirus D5.71 (Pi-BatCoV-D5.71)

None reported

Pipistrellus bat coronavirus VM312 (Pi-BatCoV-VM312)

None reported

Yellow-bellied weasel coronavirus GX (YWCoV-GX)

None reported

Chinese ferret badger coronavirus DM95 (CFBCoV-DM95)

None reported

White bream virus (WBV)

• DQ898157 Complete sequence, German isolate DF24/00

Betacoronavirus 1 (BCoV-1)

• AF391541 Complete sequence, bovine coronavirus strain ENT
• AY391777 Complete sequence, human coronavirus OC43 strain ATCC VR-759
• DQ011855 Complete sequence, Belgian porcine hemagglutinating encephalomyelitis virus isolate VW572
• EF446615 Complete sequence, equine coronavirus isolate NC99

Murine coronavirus (MuCoV)

• AF201929 Complete sequence, murine hepatitis strain 2

Human coronavirus HKU1 (HCoV-HKU1)

• AY597011 Complete sequence

Rabbit coronavirus HKU14

• JN874559 Complete sequence, isolate HKU14-1

Betacoronavirus England 1

• KC164505 Complete sequence, isolate H123990006

Rousettus bat coronavirus HKU9 (Ro-BatCoV-HKU9)

• EF065513 Complete sequence, Chinese isolate BF_005I

Pipistrellus bat coronavirus HKU5 (Pi-BatCoV-HKU5)

• EF065509 Complete sequence, Chinese isolate LMH03f

Rhinonicteris bat coronavirus 000 (Rh-BatCoV-000)

None reported

Tylonycteris bat coronavirus HKU4 (Ty-BatCoV-HKU4)

• DQ648794 Complete sequence isolate 133/2005

Middle East respiratory syndrome coronavirus

• KF186567 Complete sequence, Saudi isolate Al-Hasa_1_2013

Severe acute respiratory syndrome-related coronavirus (SARSr-CoV)

• AY278554 Complete sequence, Hong Kong isolate CUHK-W1

Munia coronavirus HKU13 (MunCoV-HKU13)

• FJ376622 Complete sequence, isolate 3514

Bulbul coronavirus HKU11 (BuCoV-HKU11)

• FJ376619 Complete sequence, isolate 934

Thrush coronavirus HKU12 (ThCoV-HKU12)

• FJ376621 Complete sequence, isolate 600

Wigeon coronavirus HKU20

• JQ065048 Complete sequence, isolate HKU20-9243

Porcine coronavirus HKU15

• JQ065042 Complete sequence, isolate HKU15-44

Sparrow coronavirus HKU17

• JQ065045 Complete sequence, isolate HKU17-6124

White-eye coronavirus HKU16

• JQ065044 Complete sequence, isolate HKU16-6847

Night-heron coronavirus HKU19

• JQ065047 Complete sequence, isolate HKU19-6918

Magpie-robin coronavirus HKU18

• JQ065046 Complete sequence, isolate HKU18-chu3

Common-moorhen coronavirus HKU21

• JQ065049 Complete sequence, isolate HKU21-8295

Avian coronavirus (AvCoV)

• EU095850 Complete sequence, turkey coronavirus isolate MG10
• M95169 Complete sequence, infectious bronchitis virus Beaudette strain

Beluga whale coronavirus SW1 (BWCoV-SW1)

• EU111742 Complete sequence

Human torovirus (HuTV)

None reported

Bovine torovirus (BoTV)

• AY427798 Complete sequence, isolate Breda 1

Equine torovirus (EqTV)

None reported

Porcine torovirus (PoTV)

None reported

Duck coronavirus (DCoV)

None reported

Goose coronavirus (GCoV)

None reported

Pigeon coronavirus (PCoV)

None reported

Parrot coronavirus AV71 (PaCoV)

None reported

Sable antelope coronavirus

• EF424621 Complete sequence, strain US/OH1/2003, isolate WD1418

Asian leopard cat coronavirus (ALCCoV)

None reported

Chinese ferret badger coronavirus GX (CFBCoV-GX)

None reported